PhytAMP: a database dedicated to antimicrobial plant peptides
Identifieur interne : 000064 ( Main/Exploration ); précédent : 000063; suivant : 000065PhytAMP: a database dedicated to antimicrobial plant peptides
Auteurs : Riadh Hammami [Tunisie, France, Canada] ; Jeannette Ben Hamida [Tunisie] ; Gérard Vergoten [France] ; Ismail Fliss [Canada]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2008.
Descripteurs français
- KwdFr :
- Anti-infectieux (classification), Anti-infectieux (composition chimique), Anti-infectieux (pharmacologie), Bases de données factuelles (MeSH), Interface utilisateur (MeSH), Peptides antimicrobiens cationiques (classification), Peptides antimicrobiens cationiques (composition chimique), Peptides antimicrobiens cationiques (pharmacologie), Phylogenèse (MeSH), Plantes (métabolisme).
- MESH :
- classification : Anti-infectieux, Peptides antimicrobiens cationiques.
- composition chimique : Anti-infectieux, Peptides antimicrobiens cationiques.
- métabolisme : Plantes.
- pharmacologie : Anti-infectieux, Peptides antimicrobiens cationiques.
- Bases de données factuelles, Interface utilisateur, Phylogenèse.
English descriptors
- KwdEn :
- Anti-Infective Agents (chemistry), Anti-Infective Agents (classification), Anti-Infective Agents (pharmacology), Antimicrobial Cationic Peptides (chemistry), Antimicrobial Cationic Peptides (classification), Antimicrobial Cationic Peptides (pharmacology), Databases, Factual (MeSH), Phylogeny (MeSH), Plants (metabolism), User-Computer Interface (MeSH).
- MESH :
- chemical , chemistry : Anti-Infective Agents, Antimicrobial Cationic Peptides.
- chemical , classification : Anti-Infective Agents, Antimicrobial Cationic Peptides.
- chemical , pharmacology : Anti-Infective Agents, Antimicrobial Cationic Peptides.
- metabolism : Plants.
- Databases, Factual, Phylogeny, User-Computer Interface.
Abstract
Plants produce small cysteine-rich antimicrobial peptides as an innate defense against pathogens. Based on amino acid sequence homology, these peptides were classified mostly as α-defensins, thionins, lipid transfer proteins, cyclotides, snakins and hevein-like. Although many antimicrobial plant peptides are now well characterized, much information is still missing or is unavailable to potential users. The compilation of such information in one centralized resource, such as a database would therefore facilitate the study of the potential these peptide structures represent, for example, as alternatives in response to increasing antibiotic resistance or for increasing plant resistance to pathogens by genetic engineering. To achieve this goal, we developed a new database, PhytAMP, which contains valuable information on antimicrobial plant peptides, including taxonomic, microbiological and physicochemical data. Information is very easy to extract from this database and allows rapid prediction of structure/function relationships and target organisms and hence better exploitation of plant peptide biological activities in both the pharmaceutical and agricultural sectors. PhytAMP may be accessed free of charge at
Url:
DOI: 10.1093/nar/gkn655
PubMed: 18836196
PubMed Central: 2686510
Affiliations:
Links toward previous steps (curation, corpus...)
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- to stream Pmc, to step Curation: 000229
- to stream Pmc, to step Checkpoint: 000313
- to stream PubMed, to step Corpus: 000759
- to stream PubMed, to step Curation: 000755
- to stream PubMed, to step Checkpoint: 000730
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- to stream Main, to step Curation: 000064
Le document en format XML
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Université des Sciences et Technologie de Lille, Lille, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>UMR CNRS 8576 ‘Glycobiologie Structurale et Fonctionnelle’, Université des Sciences et Technologie de Lille, Lille</wicri:regionArea></affiliation></author><author><name sortKey="Fliss, Ismail" sort="Fliss, Ismail" uniqKey="Fliss I" first="Ismail" last="Fliss">Ismail Fliss</name><affiliation wicri:level="1"><nlm:aff id="AFF1">Institut des Nutraceutiques et des Aliments Fonctionnels (INAF), Université Laval, Québec, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Institut des Nutraceutiques et des Aliments Fonctionnels (INAF), Université Laval, Québec</wicri:regionArea></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Anti-Infective Agents (chemistry)</term><term>Anti-Infective Agents (classification)</term><term>Anti-Infective Agents (pharmacology)</term><term>Antimicrobial Cationic Peptides (chemistry)</term><term>Antimicrobial Cationic Peptides (classification)</term><term>Antimicrobial Cationic Peptides (pharmacology)</term><term>Databases, Factual (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plants (metabolism)</term><term>User-Computer Interface (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Anti-infectieux (classification)</term><term>Anti-infectieux (composition chimique)</term><term>Anti-infectieux (pharmacologie)</term><term>Bases de données factuelles (MeSH)</term><term>Interface utilisateur (MeSH)</term><term>Peptides antimicrobiens cationiques (classification)</term><term>Peptides antimicrobiens cationiques (composition chimique)</term><term>Peptides antimicrobiens cationiques (pharmacologie)</term><term>Phylogenèse (MeSH)</term><term>Plantes (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Anti-Infective Agents</term><term>Antimicrobial Cationic Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Anti-Infective Agents</term><term>Antimicrobial Cationic Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Anti-Infective Agents</term><term>Antimicrobial Cationic Peptides</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Anti-infectieux</term><term>Peptides antimicrobiens cationiques</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Anti-infectieux</term><term>Peptides antimicrobiens cationiques</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plants</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Plantes</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Anti-infectieux</term><term>Peptides antimicrobiens cationiques</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Factual</term><term>Phylogeny</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données factuelles</term><term>Interface utilisateur</term><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Plants produce small cysteine-rich antimicrobial peptides as an innate defense against pathogens. Based on amino acid sequence homology, these peptides were classified mostly as α-defensins, thionins, lipid transfer proteins, cyclotides, snakins and hevein-like. Although many antimicrobial plant peptides are now well characterized, much information is still missing or is unavailable to potential users. The compilation of such information in one centralized resource, such as a database would therefore facilitate the study of the potential these peptide structures represent, for example, as alternatives in response to increasing antibiotic resistance or for increasing plant resistance to pathogens by genetic engineering. To achieve this goal, we developed a new database, PhytAMP, which contains valuable information on antimicrobial plant peptides, including taxonomic, microbiological and physicochemical data. Information is very easy to extract from this database and allows rapid prediction of structure/function relationships and target organisms and hence better exploitation of plant peptide biological activities in both the pharmaceutical and agricultural sectors. PhytAMP may be accessed free of charge at <ext-link ext-link-type="uri" xlink:href="http://phytamp.pfba-lab.org">http://phytamp.pfba-lab.org</ext-link>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Balls, Ak" uniqKey="Balls A">AK Balls</name></author><author><name sortKey="Hale, Ws" uniqKey="Hale W">WS Hale</name></author><author><name sortKey="Harris, Th" uniqKey="Harris T">TH Harris</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Broekaert, Wf" uniqKey="Broekaert W">WF Broekaert</name></author><author><name sortKey="Terras, Fr" uniqKey="Terras F">FR Terras</name></author><author><name sortKey="Cammue, Bp" uniqKey="Cammue B">BP Cammue</name></author><author><name sortKey="Osborn, Rw" uniqKey="Osborn R">RW Osborn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Broekaert, Wf" uniqKey="Broekaert W">WF Broekaert</name></author><author><name sortKey="Cammue, 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sortKey="Harrison, Sj" uniqKey="Harrison S">SJ Harrison</name></author><author><name sortKey="Green, Jl" uniqKey="Green J">JL Green</name></author><author><name sortKey="Manners, Jm" uniqKey="Manners J">JM Manners</name></author><author><name sortKey="Craik, Dj" uniqKey="Craik D">DJ Craik</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Canada</li><li>France</li><li>Tunisie</li></country></list><tree><country name="Tunisie"><noRegion><name sortKey="Hammami, Riadh" sort="Hammami, Riadh" uniqKey="Hammami R" first="Riadh" last="Hammami">Riadh Hammami</name></noRegion><name sortKey="Ben Hamida, Jeannette" sort="Ben Hamida, Jeannette" uniqKey="Ben Hamida J" first="Jeannette" last="Ben Hamida">Jeannette Ben Hamida</name></country><country name="France"><noRegion><name sortKey="Hammami, Riadh" sort="Hammami, Riadh" uniqKey="Hammami R" first="Riadh" last="Hammami">Riadh Hammami</name></noRegion><name sortKey="Vergoten, Gerard" sort="Vergoten, Gerard" uniqKey="Vergoten G" first="Gérard" last="Vergoten">Gérard Vergoten</name></country><country name="Canada"><noRegion><name sortKey="Hammami, Riadh" sort="Hammami, Riadh" uniqKey="Hammami R" first="Riadh" last="Hammami">Riadh Hammami</name></noRegion><name sortKey="Fliss, Ismail" sort="Fliss, Ismail" uniqKey="Fliss I" first="Ismail" last="Fliss">Ismail Fliss</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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